PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505954.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 202aa    MW: 22416.3 Da    PI: 4.4285
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.12.7e-42331321100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+ +l+a+la
  XP_004505954.1  33 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEDQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVIELQAQLA 127
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_004505954.1 128 KAQAE 132
                     99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.95432133IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-4233130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MECSDTTNSS APFFHYSPTS SSSSPIPQVV MSPCAACKIL RRRCADKCVL APYFPPTEPA  60
KFTIAHRVFG ASNIIKFLQE LPEDQRADAV TSMVYEASAR IRDPVYGCAG AICQLQKQVI  120
ELQAQLAKAQ AEVVNMQLQQ ANLVALICME MSQSPQESPQ QSLDNNNNND DDFINPSTPY  180
SSNYQIGLNF LEENSLWEPL WT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971751e-121BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505954.11e-150PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK088e-77LBD11_ARATH; LOB domain-containing protein 11
TrEMBLG7IKN31e-101G7IKN3_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGGLYMA11G15810.13e-98(Glycine max)
STRINGGLYMA13G40370.22e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-61LOB domain-containing protein 1